- Added multi-resolution heatmaps (MRH).
- Added stand-alone script for plotting MRH data.
- Fixed requirements resolution for pip loading without requirements already installed.
- Re-implemented Poisson model for HiC probability algorithm.
- Lowered memory requirement for HiC data loading.
- Added dockerfile for building docker image.
- Expanded functionality of Express to include support to Knight-Ruiz algorithm to both 5C and HiC algorthims.
- Added binary counts option to Express in HiC.
- Added non-logged counts functionality to Express in 5C.
- Added pseudo-count option to Binning in HiC.
- Dramatically sped up heatmap creation for ‘fend’-corrected heatmaps using probability or express corrections.
- Added binary distance-dependence calculation alongside standard.
- Fixed Express algorithm stopping criteria.
- Updated Probability algorithm and documentation.
- Fixed bug introduced into HiC binning algorithm.
- Added binning documentation.
- Added Travis automated testing.